Sequence Translator docs, release notes
The Sequence Translator plugin is a specialized bioinformatics tool that enables translation of oligonucleotide sequences between different representations and provides advanced polymer sequence manipulation capabilities.
Sequence Translator consists of two main components:
- Oligo Toolkit: Translates oligonucleotide sequences between different formats used by various synthesizers (Axolabs, BioSpring, MerMade12, etc.)
- PolyTool: Handles cyclized peptides and polymer sequences with specialized conversion and enumeration capabilities
Main features:
- Sequence translation:
- Translates between multiple oligonucleotide formats
- Bulk sequence conversion with table input support
- Chemical structure generation (SDF, SMILES) from sequences
- PolyTool advanced features:
- Cyclized peptide sequence conversion from custom notation to HELM format
- Sequence enumeration for combinatorial chemistry applications
- Rule-based sequence manipulation with JSON configuration files
- Atomic-level molecular structure conversion
- Integration features:
- Custom cell renderers for cyclized sequences in grid and other viewers