Plugin releases

Announcements
121

CDD Vault Link 1.0.4 (2025-05-28) docs, release notes

Features:

  • Implemented routing functionality
  • Added ‘Protocols’ and ‘Collections’ links to the home page

Check out our new demo video to explore the full capabilities of the CDD Vault Link plugin.

3 Likes
122

Bio 2.22.0 ( 2025-06-03) docs, release notes

MSA Header Enhancements:

  • Added header tracks: Conservation and WebLogo
  • Added tooltips for the WebLogo header
  • Improved performance of Conservation and WebLogo calculations

Sequence Scrolling and Positioning:

  • Added optional scrolling header for short sequences
  • Improved detection of the maximum sequence length
  • Improved display of the current position

Performance Improvements:

  • Added faster methods for retrieving monomers at specified positions

See the new MSA header enhancements in action:

MSA-header

2 Likes
123

File Editors 1.3.1 (2025-07-30)

Added TeX format support with full viewing, editing, and sharing capabilities.
latex

3 Likes
124

Pyodide 1.3.0 (2025-07-25) docs, release notes

Features:

  • Support calling FuncCalls using run_sync and execFuncCall
  • Support script dependencies using the meta.dependencies annotation
  • Display script errors in the console with accurate line numbers
1 Like
125

Curves 1.10.0 (2025-07-29) docs, release notes

Features:

  • 4plDoseResponse: Added a function for 4PL dose-response curve fitting
  • Data-to-curves: Added full support for the script, including history, data sync, and two-tier support
  • Added support for rendering raw PNG images
3 Likes
126

Chem 1.16.0 (2025-07-28) docs, release notes

Features:

  • Mixtures: Added renderer, widgets, and semantic type. For detail, see Cheminformatics updates
  • #3426 CPC: Moved to chem, factored into a separate widget file
  • #3302: Multiple scaffold trees: Naming/coloring should be saved in projects
  • MMP:
    • Added hints
    • Added collaborative filtering with parent table
    • Added the ability to filter fragments/pairs
    • View results on PC plot, select activity difference function with scaling, in cell pc plots for activities, show trellis filters in popup, added trellis legend
  • Added description to scatter plot for chemical space and activity cliffs
  • Similarity/Diversity: Show error in case no molecule column was found

Bug fixes:

  • #3408: Scaffold tree: Molecule coloring disappears after closing the tree
  • #3346: Export as SDF: Fixed none values are written as numbers ant not as empty strings
  • #3399: Do not allow to modify Scaffold colors from Scatterplot or other viewers
3 Likes
127

Charts 1.6.0 (2025-07-28): docs, release notes

Bug fixes:

  • 3420: Tree viewer: Moved Show mouse over line to Style section on the Context Panel
  • 3421: Tree viewer: Different row source behavior when changing On Click property
  • 3397: Tree viewer: Selection and clicking issues
2 Likes
128

Sequence Translator docs, release notes

The Sequence Translator plugin is a specialized bioinformatics tool that enables translation of oligonucleotide sequences between different representations and provides advanced polymer sequence manipulation capabilities.
Sequence Translator consists of two main components:

  • Oligo Toolkit: Translates oligonucleotide sequences between different formats used by various synthesizers (Axolabs, BioSpring, MerMade12, etc.)
  • PolyTool: Handles cyclized peptides and polymer sequences with specialized conversion and enumeration capabilities

Main features:

  • Sequence translation:
    • Translates between multiple oligonucleotide formats
    • Bulk sequence conversion with table input support
    • Chemical structure generation (SDF, SMILES) from sequences
  • PolyTool advanced features:
    • Cyclized peptide sequence conversion from custom notation to HELM format
    • Sequence enumeration for combinatorial chemistry applications
    • Rule-based sequence manipulation with JSON configuration files
    • Atomic-level molecular structure conversion
  • Integration features:
    • Custom cell renderers for cyclized sequences in grid and other viewers
2 Likes
129

Bio 2.22.12 (2025-09-30) docs, release notes

Features:

  • Added matching with the Monomer Library tool
  • Improved converter functionality
  • Harmonized options in Similarity/Diversity viewers
  • Enabled forced detection of macromolecules for arbitrary columns
2 Likes
130

Chem 1.16.1 - 1.16.5 (2025-09-15) docs, release notes

Features:

  • Added persistent layout tag for scaffold alignment

Bug fixes:

  • #3464 Double values in SDF export are saved with unnecessary precision
  • #3445 Structure filter does not realign when coordinates change but structure does not
  • #3433 MMP viewer can’t be added in case with multiple tabs
2 Likes
131

Sequence Translator 1.9.14 (2025-09-23) docs, release notes

Improved Polytool rules editor, added more examples

2 Likes
132

Curves 1.10.1 - 1.10.12 (2025-09-16) docs, release notes

  • Enabled skipping rendering too small plates
  • Data-to-Curves:
    • Added well-level additional columns
    • Added joining options
  • MultiCurveViewer: Added showOutliers parameter and legendColumnName property
  • Added MSR script and updated environment
2 Likes
133

Power Grid 1.5.5 - 1.7.9 (2025-09-23) docs, release notes

Features:

  • Forms viewer: Added substructure highlighting support
  • Smart form: Enabled display of only the first ten columns by default

Bug fixes

  • Smart form:
    • Fixed issue with adding categorical columns from the Context Panel
    • Fixed incorrect rendering on column resize
2 Likes
134

Power Pack 1.4.0 - 1.7.7 (2025-10-02) docs, release notes

Features:

  • Implemented the Activity dashboard widget
  • Complex calculated columns: Enabled persisting with the layout

Bug fixes:

  • #2449: Add new column: Using non-empty rows in preview
  • #3306: Calculated columns: types validation error
  • #3389: Formula line preview for scatterplot used in trellis plot does not reflect axes configured in scatterplot
  • #3269: Projects: XLSX files with multiple sheets: data sync is only provided for the first sheet
  • #3392: Scatterplot: Formula lines: axis in dialog should be the same as on the viewer
2 Likes
135

Bio 2.23.0 - 2.25.1 (2025-10-30) docs, release notes

Breaking changes:

  • Reworked monomer library management: transitioned to library providers instead of single file-based monomer libraries and enabled support for multiple providers. Update your code accordingly

Features:

  • HELM support: Added CHEMS /SMILES and multi-polymer type support
  • Full BILN support: Added rendering and conversion for SMILES/CHEMS, HELM, separator, FASTA, and molecular forms; parsing; monomer library handling
  • Improved monomer library loading speed

Bug fixes:

  • Fixed dialogs for adding/removing monomer libraries
  • Fixed HELM converter to support multi-type polymers
2 Likes
136

Chem 1.16.6 (2025-10-16) docs, release notes

Features:

  • Improved Mixtures widget in the Context Panel to display component names where available
  • Enabled calculation of Context Panel Descriptors via Docker
  • Add new column dialog: Added ability to run Descriptors, Properties, Toxicity Risks, and Structural Alerts
  • Scaffold tree: Added explanation tooltip why the tree can’t be generated

Bug fixes:

  • #3497: Chem: MPO: Update to work correctly with data sync
  • Similarity Search viewer: incorrect coloring after sorting a dataset
  • Fixed distance functions
2 Likes
137

Power Grid 1.7.10 (2025-10-21) docs, release notes

Fixed:

  • Forms viewer: incorrect row coloring when scrolling grid with pinned rows
2 Likes
138

HELM 2.11.0 - 2.13.1 (2025-10-31) docs, release notes

Features:

  • Monomer library management: transitioned to library providers instead of single file-based monomer libraries and enabled support for multiple providers.
  • Added CHEMS and SMILES support
  • Helm Web Editor: Added multi-polymer type support

Fixed:

  • Compatibility with platform version 1.25
2 Likes
139

Compute 1.45.5 (2025-10-30) docs

  • Features:

    • Early stopping: Automatically stops the fitting process when the loss function reaches a specified threshold
    • Stop after: Interrupts the fitting process once the desired number of valid points is found
    • Reproducibility: Ensures consistent, reproducible results across runs

  • Updated the numerical optimization algorithm

  • Enhanced overall usability and user experience

2 Likes
140

Peptides 1.25.0-1.27.2 ( 2025-11-12) docs, release notes

Features:

  • Introduced the sequence mutation cliffs viewer with support for current row tracking
  • Enabled full filter reactivity for all panels, tooltips, aggregations, and viewers
  • Reworked mutation cliffs and tooltips, showing information about sequence pairs and their statistics
  • Added sum columns for the sequence variability map viewer
  • Removed target column for peptides analysis

Bug fixes:

  • Corrected aggregate calculations, statistics, and mean difference comparisons
  • Fixed premature shutdown of MCL viewer on loading
  • Fixed distribution tooltips not showing on WebLogo hover
2 Likes