Plugin releases

121

CDD Vault Link 1.0.4 (2025-05-28) docs, release notes

Features:

  • Implemented routing functionality
  • Added ‘Protocols’ and ‘Collections’ links to the home page

Check out our new demo video to explore the full capabilities of the CDD Vault Link plugin.

3 Likes
122

Bio 2.22.0 ( 2025-06-03) docs, release notes

MSA Header Enhancements:

  • Added header tracks: Conservation and WebLogo
  • Added tooltips for the WebLogo header
  • Improved performance of Conservation and WebLogo calculations

Sequence Scrolling and Positioning:

  • Added optional scrolling header for short sequences
  • Improved detection of the maximum sequence length
  • Improved display of the current position

Performance Improvements:

  • Added faster methods for retrieving monomers at specified positions

See the new MSA header enhancements in action:

MSA-header

2 Likes
123

File Editors 1.3.1 (2025-07-30)

Added TeX format support with full viewing, editing, and sharing capabilities.
latex

3 Likes
124

Pyodide 1.3.0 (2025-07-25) docs, release notes

Features:

  • Support calling FuncCalls using run_sync and execFuncCall
  • Support script dependencies using the meta.dependencies annotation
  • Display script errors in the console with accurate line numbers
1 Like
125

Curves 1.10.0 (2025-07-29) docs, release notes

Features:

  • 4plDoseResponse: Added a function for 4PL dose-response curve fitting
  • Data-to-curves: Added full support for the script, including history, data sync, and two-tier support
  • Added support for rendering raw PNG images
3 Likes
126

Chem 1.16.0 (2025-07-28) docs, release notes

Features:

  • Mixtures: Added renderer, widgets, and semantic type. For detail, see Cheminformatics updates
  • #3426 CPC: Moved to chem, factored into a separate widget file
  • #3302: Multiple scaffold trees: Naming/coloring should be saved in projects
  • MMP:
    • Added hints
    • Added collaborative filtering with parent table
    • Added the ability to filter fragments/pairs
    • View results on PC plot, select activity difference function with scaling, in cell pc plots for activities, show trellis filters in popup, added trellis legend
  • Added description to scatter plot for chemical space and activity cliffs
  • Similarity/Diversity: Show error in case no molecule column was found

Bug fixes:

  • #3408: Scaffold tree: Molecule coloring disappears after closing the tree
  • #3346: Export as SDF: Fixed none values are written as numbers ant not as empty strings
  • #3399: Do not allow to modify Scaffold colors from Scatterplot or other viewers
3 Likes
127

Charts 1.6.0 (2025-07-28): docs, release notes

Bug fixes:

  • 3420: Tree viewer: Moved Show mouse over line to Style section on the Context Panel
  • 3421: Tree viewer: Different row source behavior when changing On Click property
  • 3397: Tree viewer: Selection and clicking issues
2 Likes
128

Sequence Translator docs, release notes

The Sequence Translator plugin is a specialized bioinformatics tool that enables translation of oligonucleotide sequences between different representations and provides advanced polymer sequence manipulation capabilities.
Sequence Translator consists of two main components:

  • Oligo Toolkit: Translates oligonucleotide sequences between different formats used by various synthesizers (Axolabs, BioSpring, MerMade12, etc.)
  • PolyTool: Handles cyclized peptides and polymer sequences with specialized conversion and enumeration capabilities

Main features:

  • Sequence translation:
    • Translates between multiple oligonucleotide formats
    • Bulk sequence conversion with table input support
    • Chemical structure generation (SDF, SMILES) from sequences
  • PolyTool advanced features:
    • Cyclized peptide sequence conversion from custom notation to HELM format
    • Sequence enumeration for combinatorial chemistry applications
    • Rule-based sequence manipulation with JSON configuration files
    • Atomic-level molecular structure conversion
  • Integration features:
    • Custom cell renderers for cyclized sequences in grid and other viewers
2 Likes